Pseudomonas sRNA

Pseudomonas sRNA are non-coding RNAs (ncRNA) that were predicted by the bioinformatic program SRNApredict2. This program identifies putative sRNAs by searching for co-localization of genetic features commonly associated with sRNA-encoding genes and the expression of the predicted sRNAs was subsequently confirmed by Northern blot analysis. These sRNAs have been shown to be conserved across several pseudomonas species but their function is yet to be determined.[1]

See also

References

  1. ^ Livny, J.; Brencic, A.; Lory, S.; Waldor, K. (2006). "Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2" (Free full text). Nucleic Acids Research 34 (12): 3484–3493. doi:10.1093/nar/gkl453. ISSN 0305-1048. PMC 1524904. PMID 16870723. http://nar.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=16870723.  edit
Gallery of Pseudomonas small RNA secondary structure images
P2: Secondary structure taken from the Rfam database. Family RF01672  
P10: Secondary structure taken from the Rfam database. Family RF01668  
P13: Secondary structure taken from the Rfam database. Family RF01665  
P14: Secondary structure taken from the Rfam database. Family RF01669  
P17: Secondary structure taken from the Rfam database. Family RF01670  
P18: Secondary structure taken from the Rfam database. Family RF01671  
P20: Secondary structure taken from the Rfam database. Family RF01673  
P27: Secondary structure taken from the Rfam database. Family RF01674  
P29: Secondary structure taken from the Rfam database. Family RF01675  
P31: Secondary structure taken from the Rfam database. Family RF01676  
P35: Secondary structure taken from the Rfam database. Family RF01677